<- [[DokuWiki plugin]] ======PubMed plugin====== This is a plugin for DokuWiki that retrieves the information from PubMed widh PMID. The plugin stores NCBI ESummary XML file in /data/media/ncbi_esummary directory. ^Download|{{computer:source:pubmed.zip|pubmed.zip}} (4.8 KB)|2008-03-22| :!: This plugin requires [[bio plugin]] and [[cache plugin]] ======Functions====== **%%{{pubmed>[Command]:[PubMed ID]}}%%** ^ Command ^ item ^ function | ^[[#short]] |link |Show a short pubmed link from NCBI Structure database| ^[[#long]] |link |Show a detailed pubmed link from NCBI Structure database| ^[[#summaryXML]] |xml |Show a XML summary data from the NCBI database using Entrez Utilities| ^clear_summary | - |Clear cached XML files in /data/media/ncbi_esummary| ^remove_dir | - |Clear cached files and remove cache directory| ======Examples====== =====short===== {{pubmed>short:9039911}} {{pubmed>short:9039911}} =====long===== {{pubmed>long:9039911}} {{pubmed>long:9039911}} =====summaryXML===== {{pubmed>summaryXML:9039911}} {{pubmed>summaryXML:9039911}} =====The shortest link===== {{icon>bulb}} When you want to create a link, use **%%[[pubmed>9039911]]%%**. -> [[pubmed>9039911]] ====== History ====== *2008.3.22 *Some functions were parted into [[bio plugin]] and [[cache plugin]] *2008.3.7 *Bug fix of incorrect permission of cache files *2008.2.26 *Cache ESummary XML file in /data/media/ncbi_esummary directory *2007.12.08 *Fix around directory creation & ACL *Append an icon image ====== Installation ====== -Install [[bio plugin]] and [[cache plugin]] if not installed. -Download {{computer:source:pubmed.zip?cache=nocache}} and extract. -Upload the folder to /lib/plugins/ directory. {{tag>Journal NCBI DokuWiki plugin}}